What is the Difference Between Ion Exchange and Size Exclusion Chromatography?

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The main difference between ion exchange and size exclusion chromatography lies in the parameter they use for separation. Here are the key differences:

  • Ion Exchange Chromatography:
  • Separates compounds based on the electrostatic interaction of the ionic groups on the protein surface or the matrix.
  • Commonly used to analyze ionic substances, such as inorganic anions and cations.
  • Can be used for the analysis of organic ions, although it is not a very common method.
  • Can be employed as an initial capture step, an intermediate purification step, or a final polishing step.
  • Size Exclusion Chromatography:
  • Separates molecules based on their sizes.
  • Also known as gel filtration chromatography.
  • Used for separating and quantifying protein mixtures, measuring aggregates, separating low-molecular-weight excipients and impurities, and determining changes to the molecule.
  • Does not involve any interaction between the analyte and the surface.
  • Often used as a final polishing step for protein purification.

In summary, ion exchange chromatography separates molecules based on their charge, while size exclusion chromatography separates molecules based on their size. Ion exchange chromatography is commonly used for ionic substances, whereas size exclusion chromatography is often employed for protein mixtures and related applications.

Comparative Table: Ion Exchange vs Size Exclusion Chromatography

Here is a table comparing the differences between ion exchange and size exclusion chromatography:

Property Ion Exchange Chromatography Size Exclusion Chromatography
Separation Mechanism Separates ions based on their charge and interactions with ion exchangers. Separates molecules based on their size and molecular weight.
Analyte Type Commonly used for inorganic anions and cations; can also analyze organic ions and charged molecules like proteins. Separates molecules in a mixture by their size, including large biomolecules and proteins.
Column Type Columns contain ion exchangers, which can be cationic or anionic, depending on the desired separation. Columns consist of a porous matrix of spherical particles (beads) with varying pore sizes that lack reactivity.
Sample Preparation Sample should be fully dissolved; can centrifuge or filter to remove particulate material. Sample should be fully dissolved; can centrifuge or filter to remove particulate material.
Buffer Selection Typically used with a suitable buffer depending on the purpose of the separation. Typically used with a suitable buffer depending on the purpose of the separation.

The key difference between ion exchange and size exclusion chromatography is the parameter used for separation. Ion exchange chromatography separates ions based on their charge and interactions with ion exchangers, while size exclusion chromatography separates molecules based on their size and molecular weight.