What is the Difference Between Enhancer and Promoter?

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Enhancers and promoters are both gene-regulatory elements that play crucial roles in the transcription process. However, they have distinct functions and characteristics:

  • Function: Promoters initiate the process of transcription, while enhancers increase the level of transcription.
  • Size: Promoters are fairly large nucleotide sequences, typically 50-1500 base pairs long, whereas enhancers are shorter, around 100-1000 base pairs long.
  • Location: Promoters are located near the start codon on the transcription site, upstream of the coding region, while enhancers can be located anywhere upstream or downstream from the start site.
  • Binding: Promoters bind to RNA polymerase and transcription factors to start transcription, while enhancers are bound by activator proteins to enhance the level of transcription.

Both promoters and enhancers bind to transcription factors and have regulatory roles in gene expression. Despite their distinct functions and characteristics, recent research has shown that there is not a strict dichotomy between promoters and enhancers, as some promoter sequences also encode enhancer activity and vice versa.

Comparative Table: Enhancer vs Promoter

Here is a table summarizing the differences between enhancers and promoters:

Feature Enhancers Promoters
Definition Enhancers are short nucleotide sequences that enhance the transcription rate in the genome. Promoters are fairly large nucleotide sequences that initiate the process of transcription.
Length 50-1500 base pairs. 100-1000 base pairs.
Function Enhancers increase the level of transcription. Promoters initiate transcription.
Binding Enhancers are bound by activator proteins to enhance the level of transcription. Promoters bind to RNA polymerase and transcription factors to start transcription.
Location Enhancers can be located anywhere upstream or downstream from the start site. Promoters are located near the start codon on the transcription site, upstream.
Transcription Direction Enhancers transcribe unstable RNA in both directions. Promoters produce stable mRNA in the sense direction and unstable RNA in the antisense direction.

Both enhancers and promoters are gene-regulatory elements that play crucial roles in the transcription process. While promoters initiate transcription, enhancers increase the level of transcription by binding to transcription factors.